HL_7DUI_013

3D structure

PDB id

7DUI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUI_013 not in the Motif Atlas

Homologous match to HL_4LFB_013

Geometric discrepancy: 0.1386

The information below is about HL_4LFB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUI|1|A|G|521
7DUI|1|A|C|522
7DUI|1|A|A|523
7DUI|1|A|G|524
7DUI|1|A|C|525
7DUI|1|A|C|526
7DUI|1|A|7MG|527
7DUI|1|A|C|528

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')