HL_7DUJ_020

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUJ_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0879

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7DUJ|1|A|C|897
7DUJ|1|A|G|898
7DUJ|1|A|C|899
7DUJ|1|A|A|900
7DUJ|1|A|A|901
7DUJ|1|A|G|902

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17