HL_7DUJ_030
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 7DUJ|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7DUJ_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1374
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7DUJ|1|A|G|1356
7DUJ|1|A|A|1357
7DUJ|1|A|U|1358
7DUJ|1|A|C|1359
7DUJ|1|A|A|1360
7DUJ|1|A|G|1361
7DUJ|1|A|C|1361|||A
7DUJ|1|A|C|1362
7DUJ|1|A|A|1363
7DUJ|1|A|U|1364
7DUJ|1|A|G|1365
7DUJ|1|A|C|1366
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain U
- 30S ribosomal protein Thx
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