HL_7DUK_008

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUK_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0742

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7DUK|1|A|C|320
7DUK|1|A|A|321
7DUK|1|A|C|322
7DUK|1|A|U|323
7DUK|1|A|G|324
7DUK|1|A|A|325
7DUK|1|A|G|326
7DUK|1|A|A|327
7DUK|1|A|C|328
7DUK|1|A|A|329
7DUK|1|A|C|330
7DUK|1|A|G|331
7DUK|1|A|G|332
7DUK|1|A|G|333

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20