HL_7DUL_022

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7DUL_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1017

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7DUL|1|A|U|1012
7DUL|1|A|G|1013
7DUL|1|A|A|1014
7DUL|1|A|A|1015
7DUL|1|A|A|1016
7DUL|1|A|G|1017

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19