HL_7EEN_001

3D structure

PDB id

7EEN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.7 Å

Loop

Sequence

(OMC)GAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7EEN_001 not in the Motif Atlas

Geometric match to HL_8C3A_216

Geometric discrepancy: 0.0877

The information below is about HL_8C3A_216

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

7EEN|1|A|OMC|12
7EEN|1|A|G|13
7EEN|1|A|A|14
7EEN|1|A|G|15
7EEN|1|A|A|16
7EEN|1|A|G|17

Current chains

Chain A

DNA/RNA (27-MER)

Nearby chains

Chain B

DNA/RNA (27-MER)

Chain C

DNA/RNA (27-MER)