HL_7EQJ_005

3D structure

PDB id

7EQJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of E. coli Valine tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.043 Å

Loop

Sequence

CCUUACAG*G

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7EQJ_005 not in the Motif Atlas

Homologous match to HL_5UD5_002

Geometric discrepancy: 0.5447

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7EQJ|1|B|C|31
7EQJ|1|B|C|32
7EQJ|1|B|U|33
7EQJ|1|B|U|34
7EQJ|1|B|A|35
7EQJ|1|B|C|36
7EQJ|1|B|A|38
7EQJ|1|B|G|39
*
7EQJ|1|B|G|39

Current chains

Chain B

RNA (76-MER)

Nearby chains

Chain A

Transfer RNA; tRNA