3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
C(OMG)UCUUG(1MA)(A2M)AC(A2M)CG
Length
14 nucleotides
Bulged bases
7F5S|1|L5|A|1324, 7F5S|1|L5|C|1325
QA status
Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7F5S_017 not in the Motif Atlas
Geometric match to HL_5NFV_001
Geometric discrepancy: 0.1447
The information below is about HL_5NFV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.3
Basepair signature
cWW-F
Number of instances in this motif group
5

Unit IDs

7F5S|1|L5|C|1315
7F5S|1|L5|OMG|1316
7F5S|1|L5|U|1317
7F5S|1|L5|C|1318
7F5S|1|L5|U|1319
7F5S|1|L5|U|1320
7F5S|1|L5|G|1321
7F5S|1|L5|1MA|1322
7F5S|1|L5|A2M|1323
7F5S|1|L5|A|1324
7F5S|1|L5|C|1325
7F5S|1|L5|A2M|1326
7F5S|1|L5|C|1327
7F5S|1|L5|G|1328

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LC
60S ribosomal protein L4
Chain La
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2099 s