HL_7F5S_051

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7F5S|1|L5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_051 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.2565

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7F5S|1|L5|C|3668
7F5S|1|L5|G|3669
7F5S|1|L5|C|3670
7F5S|1|L5|G|3671
7F5S|1|L5|G|3672
7F5S|1|L5|C|3673
7F5S|1|L5|G|3674

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15