3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
GGGAACGGGC
Length
10 nucleotides
Bulged bases
7F5S|1|L5|A|3876, 7F5S|1|L5|A|3877, 7F5S|1|L5|C|3878
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7F5S_055 not in the Motif Atlas
Homologous match to HL_8C3A_051
Geometric discrepancy: 0.0442
The information below is about HL_8C3A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.8
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
7

Unit IDs

7F5S|1|L5|G|3873
7F5S|1|L5|G|3874
7F5S|1|L5|G|3875
7F5S|1|L5|A|3876
7F5S|1|L5|A|3877
7F5S|1|L5|C|3878
7F5S|1|L5|G|3879
7F5S|1|L5|G|3880
7F5S|1|L5|G|3881
7F5S|1|L5|C|3882

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain Le
60S ribosomal protein L32

Coloring options:


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