HL_7F5S_072

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7F5S|1|L5|G|4694, 7F5S|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_072 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1657

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7F5S|1|L5|C|4688
7F5S|1|L5|PSU|4689
7F5S|1|L5|G|4690
7F5S|1|L5|A|4691
7F5S|1|L5|A|4692
7F5S|1|L5|C|4693
7F5S|1|L5|G|4694
7F5S|1|L5|C|4695
7F5S|1|L5|C|4696
7F5S|1|L5|U|4697
7F5S|1|L5|C|4698
7F5S|1|L5|U|4699
7F5S|1|L5|A|4700
7F5S|1|L5|A|4701
7F5S|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40