HL_7F5S_075

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7F5S|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_075 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0971

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7F5S|1|L5|G|4975
7F5S|1|L5|U|4976
7F5S|1|L5|A|4977
7F5S|1|L5|G|4978
7F5S|1|L5|A|4979
7F5S|1|L5|C|4980
7F5S|1|L5|G|4981
7F5S|1|L5|A|4982
7F5S|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31