HL_7F5S_081

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

7F5S|1|L8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_081 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.162

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7F5S|1|L8|C|107
7F5S|1|L8|A|108
7F5S|1|L8|C|109
7F5S|1|L8|U|110
7F5S|1|L8|U|111
7F5S|1|L8|G|112

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39