HL_7F5S_087

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

7F5S|1|L5|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F5S_087 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2856

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7F5S|1|L5|G|2624
7F5S|1|L5|U|2625
7F5S|1|L5|U|2626
7F5S|1|L5|C|2627
7F5S|1|L5|U|2628
7F5S|1|L5|C|2629
7F5S|1|L5|U|2630
7F5S|1|L5|U|2631
7F5S|1|L5|PSU|2632

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22