HL_7JJF_001

3D structure

PDB id

7JJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Sarcin-ricin loop with modified residue.

Experimental method

X-RAY DIFFRACTION

Resolution

1.2 Å

Loop

Sequence

CG(VC7)AG*G

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JJF_001 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.2169

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7JJF|1|A|C|58
7JJF|1|A|G|59
7JJF|1|A|VC7|74
7JJF|1|A|A|75
7JJF|1|A|G|76
*
7JJF|1|A|G|76

Current chains

Chain A

RNA/DNA (27-mer)

Nearby chains