HL_7JQC_001
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 7JQC|1|A|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JQC_001 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.1333
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7JQC|1|A|G|7
7JQC|1|A|U|8
7JQC|1|A|U|9
7JQC|1|A|G|10
7JQC|1|A|A|11
7JQC|1|A|U|12
7JQC|1|A|C|13
7JQC|1|A|C|14
7JQC|1|A|U|15
7JQC|1|A|G|16
7JQC|1|A|C|17
Current chains
- Chain A
- rRNA
Nearby chains
- Chain D
- uS5
- Chain F
- Nsp1
- Chain c
- Uncharacterized protein
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