HL_7JQC_002

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7JQC|1|A|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_002 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2817

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7JQC|1|A|C|69
7JQC|1|A|G|70
7JQC|1|A|G|71
7JQC|1|A|C|72
7JQC|1|A|C|73
7JQC|1|A|G|74
7JQC|1|A|G|75
7JQC|1|A|U|76
7JQC|1|A|A|77
7JQC|1|A|C|78
7JQC|1|A|A|79
7JQC|1|A|G|80

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6