HL_7JQC_013

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1773

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7JQC|1|A|A|569
7JQC|1|A|C|570
7JQC|1|A|U|571
7JQC|1|A|U|572
7JQC|1|A|U|573
7JQC|1|A|A|574
7JQC|1|A|A|575
7JQC|1|A|A|576
7JQC|1|A|U|577
7JQC|1|A|C|578
7JQC|1|A|C|579
7JQC|1|A|U|580
7JQC|1|A|U|581

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24