HL_7JQC_018

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7JQC|1|A|U|888, 7JQC|1|A|G|891, 7JQC|1|A|U|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|C|884
7JQC|1|A|U|885
7JQC|1|A|A|886
7JQC|1|A|U|887
7JQC|1|A|U|888
7JQC|1|A|U|889
7JQC|1|A|U|890
7JQC|1|A|G|891
7JQC|1|A|U|892
7JQC|1|A|U|893
7JQC|1|A|G|894
7JQC|1|A|G|895
7JQC|1|A|U|896
7JQC|1|A|U|897
7JQC|1|A|U|898
7JQC|1|A|U|899
7JQC|1|A|C|900
7JQC|1|A|G|901
7JQC|1|A|G|902

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6

Chain O

uS17