HL_7JQC_025

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

7JQC|1|A|G|1298, 7JQC|1|A|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|G|1294
7JQC|1|A|A|1295
7JQC|1|A|U|1296
7JQC|1|A|U|1297
7JQC|1|A|G|1298
7JQC|1|A|A|1299
7JQC|1|A|U|1300
7JQC|1|A|A|1301
7JQC|1|A|G|1302
7JQC|1|A|C|1303
7JQC|1|A|U|1304
7JQC|1|A|C|1305

Current chains

Chain A

rRNA

Nearby chains

Chain Q

uS19

Chain g

eS31