HL_7JQC_026

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_026 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1372

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7JQC|1|A|A|1353
7JQC|1|A|G|1354
7JQC|1|A|C|1355
7JQC|1|A|G|1356
7JQC|1|A|A|1357
7JQC|1|A|U|1358

Current chains

Chain A

rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain D

uS5