HL_7JQC_029

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQC_029 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.5386

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7JQC|1|A|C|1460
7JQC|1|A|G|1461
7JQC|1|A|U|1462
7JQC|1|A|U|1463
7JQC|1|A|C|1464
7JQC|1|A|A|1465
7JQC|1|A|G|1466

Current chains

Chain A

rRNA

Nearby chains

Chain S

eS17

Chain d

eS28

Chain h

RACK1