HL_7JQC_031

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7JQC|1|A|U|1621, 7JQC|1|A|U|1622, 7JQC|1|A|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|A|1614
7JQC|1|A|U|1615
7JQC|1|A|U|1616
7JQC|1|A|G|1617
7JQC|1|A|C|1618
7JQC|1|A|A|1619
7JQC|1|A|A|1620
7JQC|1|A|U|1621
7JQC|1|A|U|1622
7JQC|1|A|A|1623
7JQC|1|A|U|1624
7JQC|1|A|U|1625

Current chains

Chain A

rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain U

Uncharacterized protein