HL_7JQC_032
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 7JQC|1|A|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JQC_032 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3236
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7JQC|1|A|G|1658
7JQC|1|A|U|1659
7JQC|1|A|C|1660
7JQC|1|A|A|1661
7JQC|1|A|U|1662
7JQC|1|A|A|1663
7JQC|1|A|A|1664
7JQC|1|A|G|1665
7JQC|1|A|C|1666
Current chains
- Chain A
- rRNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain R
- Uncharacterized protein
- Chain U
- Uncharacterized protein
- Chain V
- uS10
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