HL_7JQC_036

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCAGCCC

Length

8 nucleotides

Bulged bases

7JQC|1|i|C|6142, 7JQC|1|i|C|6145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|i|G|6140
7JQC|1|i|G|6141
7JQC|1|i|C|6142
7JQC|1|i|A|6143
7JQC|1|i|G|6144
7JQC|1|i|C|6145
7JQC|1|i|C|6146
7JQC|1|i|C|6147

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains

Chain G

uS7

Chain a

eS25