HL_7JQC_042

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAAUACAAUUUUGAGAGGUUAAUAAAUUA

Length

30 nucleotides

Bulged bases

7JQC|1|i|U|6053, 7JQC|1|i|U|6059, 7JQC|1|i|U|6060, 7JQC|1|i|U|6061, 7JQC|1|i|G|6067, 7JQC|1|i|U|6068, 7JQC|1|i|U|6069, 7JQC|1|i|A|6070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|i|U|6049
7JQC|1|i|A|6050
7JQC|1|i|A|6051
7JQC|1|i|A|6052
7JQC|1|i|U|6053
7JQC|1|i|A|6054
7JQC|1|i|C|6055
7JQC|1|i|A|6056
7JQC|1|i|A|6057
7JQC|1|i|U|6058
7JQC|1|i|U|6059
7JQC|1|i|U|6060
7JQC|1|i|U|6061
7JQC|1|i|G|6062
7JQC|1|i|A|6063
7JQC|1|i|G|6064
7JQC|1|i|A|6065
7JQC|1|i|G|6066
7JQC|1|i|G|6067
7JQC|1|i|U|6068
7JQC|1|i|U|6069
7JQC|1|i|A|6070
7JQC|1|i|A|6071
7JQC|1|i|U|6072
7JQC|1|i|A|6073
7JQC|1|i|A|6074
7JQC|1|i|A|6075
7JQC|1|i|U|6076
7JQC|1|i|U|6077
7JQC|1|i|A|6078

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains