HL_7JQL_025

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

7JQL|1|1A|C|888, 7JQL|1|1A|C|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_025 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5833

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

7JQL|1|1A|C|884
7JQL|1|1A|C|885
7JQL|1|1A|C|886
7JQL|1|1A|A|887
7JQL|1|1A|C|888
7JQL|1|1A|C|889
7JQL|1|1A|A|890
7JQL|1|1A|G|892

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13