HL_7JQL_118

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

7JQL|1|2A|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_118 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0984

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

7JQL|1|2A|G|327
7JQL|1|2A|U|328
7JQL|1|2A|G|329
7JQL|1|2A|A|330
7JQL|1|2A|A|331
7JQL|1|2A|A|332
7JQL|1|2A|G|333
7JQL|1|2A|C|334
7JQL|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24