HL_7JQL_122

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_122 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.1065

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7JQL|1|2A|C|487
7JQL|1|2A|G|488
7JQL|1|2A|G|489
7JQL|1|2A|G|491
7JQL|1|2A|A|492
7JQL|1|2A|G|493

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22