HL_7JQL_144

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGCGG

Length

6 nucleotides

Bulged bases

7JQL|1|2A|C|1536

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_144 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3752

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

7JQL|1|2A|C|1531
7JQL|1|2A|C|1532
7JQL|1|2A|G|1533
7JQL|1|2A|C|1536
7JQL|1|2A|G|1537
7JQL|1|2A|G|1538

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains