HL_7JQL_185

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQL_185 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0963

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7JQL|1|2a|C|320
7JQL|1|2a|A|321
7JQL|1|2a|C|322
7JQL|1|2a|U|323
7JQL|1|2a|G|324
7JQL|1|2a|A|325
7JQL|1|2a|G|326
7JQL|1|2a|A|327
7JQL|1|2a|C|328
7JQL|1|2a|A|329
7JQL|1|2a|C|330
7JQL|1|2a|G|331
7JQL|1|2a|G|332
7JQL|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20