HL_7JQM_029

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7JQM|1|1A|A|1067, 7JQM|1|1A|G|1068, 7JQM|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQM_029 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4894

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7JQM|1|1A|C|1064
7JQM|1|1A|U|1065
7JQM|1|1A|U|1066
7JQM|1|1A|A|1067
7JQM|1|1A|G|1068
7JQM|1|1A|A|1069
7JQM|1|1A|A|1070
7JQM|1|1A|G|1071
7JQM|1|1A|C|1072
7JQM|1|1A|A|1073
7JQM|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains