HL_7JQM_154

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(4OC)G

Length

13 nucleotides

Bulged bases

7JQM|1|2A|A|1913, 7JQM|1|2A|C|1914, 7JQM|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQM_154 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1346

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQM|1|2A|C|1909
7JQM|1|2A|G|1910
7JQM|1|2A|PSU|1911
7JQM|1|2A|A|1912
7JQM|1|2A|A|1913
7JQM|1|2A|C|1914
7JQM|1|2A|5MU|1915
7JQM|1|2A|A|1916
7JQM|1|2A|PSU|1917
7JQM|1|2A|A|1918
7JQM|1|2A|A|1919
7JQM|1|2A|4OC|1920
7JQM|1|2A|G|1921

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2v

mRNA

Chain 2x

Transfer RNA; tRNA