HL_7JSS_012

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7JSS|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1334

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7JSS|1|1|G|410
7JSS|1|1|G|411
7JSS|1|1|A|412
7JSS|1|1|C|413
7JSS|1|1|C|414
7JSS|1|1|A|415
7JSS|1|1|U|416
7JSS|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains