HL_7JSS_019

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

7JSS|1|1|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_019 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3526

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7JSS|1|1|C|640
7JSS|1|1|U|641
7JSS|1|1|U|642
7JSS|1|1|A|643
7JSS|1|1|A|644
7JSS|1|1|C|645
7JSS|1|1|U|646
7JSS|1|1|G|647
7JSS|1|1|G|648

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35