3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGUCGAAAAA
Length
10 nucleotides
Bulged bases
7JSS|1|1|C|747, 7JSS|1|1|A|751, 7JSS|1|1|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSS_021 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.114
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

7JSS|1|1|U|744
7JSS|1|1|G|745
7JSS|1|1|U|746
7JSS|1|1|C|747
7JSS|1|1|G|748
7JSS|1|1|A|749
7JSS|1|1|A|750
7JSS|1|1|A|751
7JSS|1|1|A|752
7JSS|1|1|A|753

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain D
50S ribosomal protein L34
Chain c
50S ribosomal protein L3
Chain s
50S ribosomal protein L22

Coloring options:


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