HL_7JSS_034

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7JSS|1|1|U|1396, 7JSS|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1637

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7JSS|1|1|G|1389
7JSS|1|1|U|1390
7JSS|1|1|U|1391
7JSS|1|1|A|1392
7JSS|1|1|A|1393
7JSS|1|1|U|1394
7JSS|1|1|A|1395
7JSS|1|1|U|1396
7JSS|1|1|U|1397
7JSS|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23