HL_7JSS_035

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

7JSS|1|1|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2412

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7JSS|1|1|G|1450
7JSS|1|1|C|1451
7JSS|1|1|G|1452
7JSS|1|1|A|1453
7JSS|1|1|C|1454
7JSS|1|1|G|1455
7JSS|1|1|G|1456
7JSS|1|1|U|1457
7JSS|1|1|U|1458
7JSS|1|1|G|1459
7JSS|1|1|U|1460
7JSS|1|1|C|1461

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17