HL_7JSS_042

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7JSS|1|1|U|1729, 7JSS|1|1|C|1730, 7JSS|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_042 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.599

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7JSS|1|1|C|1727
7JSS|1|1|C|1728
7JSS|1|1|U|1729
7JSS|1|1|C|1730
7JSS|1|1|G|1731
7JSS|1|1|C|1732
7JSS|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains