HL_7JSS_046

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

7JSS|1|1|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_046 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3141

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7JSS|1|1|C|1868
7JSS|1|1|G|1869
7JSS|1|1|C|1870
7JSS|1|1|A|1871
7JSS|1|1|A|1872
7JSS|1|1|G|1873

Current chains

Chain 1

23S ribosomal RNA

Nearby chains