HL_7JSS_058

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7JSS|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1923

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7JSS|1|1|U|2404
7JSS|1|1|G|2405
7JSS|1|1|A|2406
7JSS|1|1|A|2407
7JSS|1|1|U|2408
7JSS|1|1|G|2409
7JSS|1|1|G|2410
7JSS|1|1|A|2411
7JSS|1|1|A|2412
7JSS|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15