HL_7JSS_065

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JSS|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1342

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7JSS|1|1|C|2745
7JSS|1|1|U|2746
7JSS|1|1|G|2747
7JSS|1|1|A|2748
7JSS|1|1|A|2749
7JSS|1|1|A|2750
7JSS|1|1|G|2751
7JSS|1|1|C|2752
7JSS|1|1|A|2753
7JSS|1|1|U|2754
7JSS|1|1|C|2755
7JSS|1|1|U|2756
7JSS|1|1|A|2757
7JSS|1|1|A|2758
7JSS|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13