HL_7JSS_081

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7JSS|1|3|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSS_081 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.5056

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

7JSS|1|3|C|419
7JSS|1|3|U|420
7JSS|1|3|U|421
7JSS|1|3|C|422
7JSS|1|3|G|423
7JSS|1|3|G|424

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S3

Chain I

30S ribosomal protein S4