3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUUCAAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSS_104 not in the Motif Atlas
Homologous match to HL_4RDX_003
Geometric discrepancy: 0.2629
The information below is about HL_4RDX_003
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.7
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
139

Unit IDs

7JSS|1|5|G|53
7JSS|1|5|U|54
7JSS|1|5|U|55
7JSS|1|5|C|56
7JSS|1|5|A|57
7JSS|1|5|A|58
7JSS|1|5|A|59
7JSS|1|5|U|60
7JSS|1|5|C|61

Current chains

Chain 5
tRNAfMet

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain e
50S ribosomal protein L5
Chain m
50S ribosomal protein L16

Coloring options:


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