HL_7JSZ_012

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7JSZ|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0931

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7JSZ|1|1|G|410
7JSZ|1|1|G|411
7JSZ|1|1|A|412
7JSZ|1|1|C|413
7JSZ|1|1|C|414
7JSZ|1|1|A|415
7JSZ|1|1|U|416
7JSZ|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains