HL_7JSZ_050

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACGCCAGUC

Length

10 nucleotides

Bulged bases

7JSZ|1|1|C|2145, 7JSZ|1|1|A|2147, 7JSZ|1|1|G|2148

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_050 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3968

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7JSZ|1|1|G|2141
7JSZ|1|1|A|2142
7JSZ|1|1|C|2143
7JSZ|1|1|G|2144
7JSZ|1|1|C|2145
7JSZ|1|1|C|2146
7JSZ|1|1|A|2147
7JSZ|1|1|G|2148
7JSZ|1|1|U|2149
7JSZ|1|1|C|2150

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S11