HL_7JSZ_072

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAAGCUUGCUUCU

Length

14 nucleotides

Bulged bases

7JSZ|1|3|G|82, 7JSZ|1|3|G|86

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_072 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.157

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7JSZ|1|3|A|78
7JSZ|1|3|G|79
7JSZ|1|3|A|80
7JSZ|1|3|A|81
7JSZ|1|3|G|82
7JSZ|1|3|C|83
7JSZ|1|3|U|84
7JSZ|1|3|U|85
7JSZ|1|3|G|86
7JSZ|1|3|C|87
7JSZ|1|3|U|88
7JSZ|1|3|U|89
7JSZ|1|3|C|90
7JSZ|1|3|U|91

Current chains

Chain 3

16S ribosomal RNA

Nearby chains