HL_7JSZ_100

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_100 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.3932

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7JSZ|1|3|C|1449
7JSZ|1|3|U|1450
7JSZ|1|3|U|1451
7JSZ|1|3|C|1452
7JSZ|1|3|G|1453
7JSZ|1|3|G|1454

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20