HL_7JSZ_107

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7JSZ|1|1|U|1729, 7JSZ|1|1|C|1730, 7JSZ|1|1|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_107 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2944

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7JSZ|1|1|C|1727
7JSZ|1|1|C|1728
7JSZ|1|1|U|1729
7JSZ|1|1|C|1730
7JSZ|1|1|G|1731
7JSZ|1|1|C|1732
7JSZ|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains