HL_7JT1_022

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

7JT1|1|1|A|781, 7JT1|1|1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT1_022 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3515

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7JT1|1|1|U|779
7JT1|1|1|G|780
7JT1|1|1|A|781
7JT1|1|1|A|782
7JT1|1|1|A|783
7JT1|1|1|G|784
7JT1|1|1|G|785

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2